What is the most efficient way to compute the difference of lines from two files?












13















I have two lists in python list_a and list_b. The list_a have some images links, and the list_b too. 99% of the items are the same, but i have to know this 1%. The all surplus items are in list_a, that means all items in list_b are in list_a. My initial idea is subtract all items:
list_a - list_b = list_c, where the list_c are my surplus items. My code is:



list_a = 
list_b =
list_c =

arq_b = open('list_b.txt','r')
for b in arq_b:
list_b.append(b)

arq_a = open('list_a.txt','r')
for a in arq_a:
if a not in arq_b:
list_c.append(a)

arq_c = open('list_c.txt','w')
for c in list_c:
arq_c.write(c)


I think the logic is right, if i have some items, the code is run fast. But i dont have 10 items, or 1.000, or even 100.000. I have 78.514.022 items in my list_b.txt and 78.616.777 in my list list_a.txt. I dont't know the cost of this expression: if a not in arq_b. But if i execute this code, i think wont finish in this year.



My pc have 8GB, and i allocate 15gb for swap to not explode my RAM.



My question is, there's another way to make this operation more efficiently(Faster)?




  • The list_a is ordinate but the list_b not.

  • Each item have this size: images/00000cd9fc6ae2fe9ec4bbdb2bf27318f2babc00.png

  • The order doesnt matter, i want know the surplus.










share|improve this question




















  • 5





    Does the order matter? If not, try using sets. With sets, subtraction should be linear: set_c = set_a - set_b.

    – L3viathan
    2 days ago













  • But is possible make this in python?

    – Vinicius Morais
    2 days ago











  • The python will use the most efficient way to make this operation?

    – Vinicius Morais
    2 days ago






  • 1





    Yes, I mean the Python datatype set.

    – L3viathan
    2 days ago








  • 1





    @tripleee It's not a duplicate of that - that question is about mapping subtraction over a list, this question is about the difference between what's included in the lists.

    – SpoonMeiser
    2 days ago
















13















I have two lists in python list_a and list_b. The list_a have some images links, and the list_b too. 99% of the items are the same, but i have to know this 1%. The all surplus items are in list_a, that means all items in list_b are in list_a. My initial idea is subtract all items:
list_a - list_b = list_c, where the list_c are my surplus items. My code is:



list_a = 
list_b =
list_c =

arq_b = open('list_b.txt','r')
for b in arq_b:
list_b.append(b)

arq_a = open('list_a.txt','r')
for a in arq_a:
if a not in arq_b:
list_c.append(a)

arq_c = open('list_c.txt','w')
for c in list_c:
arq_c.write(c)


I think the logic is right, if i have some items, the code is run fast. But i dont have 10 items, or 1.000, or even 100.000. I have 78.514.022 items in my list_b.txt and 78.616.777 in my list list_a.txt. I dont't know the cost of this expression: if a not in arq_b. But if i execute this code, i think wont finish in this year.



My pc have 8GB, and i allocate 15gb for swap to not explode my RAM.



My question is, there's another way to make this operation more efficiently(Faster)?




  • The list_a is ordinate but the list_b not.

  • Each item have this size: images/00000cd9fc6ae2fe9ec4bbdb2bf27318f2babc00.png

  • The order doesnt matter, i want know the surplus.










share|improve this question




















  • 5





    Does the order matter? If not, try using sets. With sets, subtraction should be linear: set_c = set_a - set_b.

    – L3viathan
    2 days ago













  • But is possible make this in python?

    – Vinicius Morais
    2 days ago











  • The python will use the most efficient way to make this operation?

    – Vinicius Morais
    2 days ago






  • 1





    Yes, I mean the Python datatype set.

    – L3viathan
    2 days ago








  • 1





    @tripleee It's not a duplicate of that - that question is about mapping subtraction over a list, this question is about the difference between what's included in the lists.

    – SpoonMeiser
    2 days ago














13












13








13


3






I have two lists in python list_a and list_b. The list_a have some images links, and the list_b too. 99% of the items are the same, but i have to know this 1%. The all surplus items are in list_a, that means all items in list_b are in list_a. My initial idea is subtract all items:
list_a - list_b = list_c, where the list_c are my surplus items. My code is:



list_a = 
list_b =
list_c =

arq_b = open('list_b.txt','r')
for b in arq_b:
list_b.append(b)

arq_a = open('list_a.txt','r')
for a in arq_a:
if a not in arq_b:
list_c.append(a)

arq_c = open('list_c.txt','w')
for c in list_c:
arq_c.write(c)


I think the logic is right, if i have some items, the code is run fast. But i dont have 10 items, or 1.000, or even 100.000. I have 78.514.022 items in my list_b.txt and 78.616.777 in my list list_a.txt. I dont't know the cost of this expression: if a not in arq_b. But if i execute this code, i think wont finish in this year.



My pc have 8GB, and i allocate 15gb for swap to not explode my RAM.



My question is, there's another way to make this operation more efficiently(Faster)?




  • The list_a is ordinate but the list_b not.

  • Each item have this size: images/00000cd9fc6ae2fe9ec4bbdb2bf27318f2babc00.png

  • The order doesnt matter, i want know the surplus.










share|improve this question
















I have two lists in python list_a and list_b. The list_a have some images links, and the list_b too. 99% of the items are the same, but i have to know this 1%. The all surplus items are in list_a, that means all items in list_b are in list_a. My initial idea is subtract all items:
list_a - list_b = list_c, where the list_c are my surplus items. My code is:



list_a = 
list_b =
list_c =

arq_b = open('list_b.txt','r')
for b in arq_b:
list_b.append(b)

arq_a = open('list_a.txt','r')
for a in arq_a:
if a not in arq_b:
list_c.append(a)

arq_c = open('list_c.txt','w')
for c in list_c:
arq_c.write(c)


I think the logic is right, if i have some items, the code is run fast. But i dont have 10 items, or 1.000, or even 100.000. I have 78.514.022 items in my list_b.txt and 78.616.777 in my list list_a.txt. I dont't know the cost of this expression: if a not in arq_b. But if i execute this code, i think wont finish in this year.



My pc have 8GB, and i allocate 15gb for swap to not explode my RAM.



My question is, there's another way to make this operation more efficiently(Faster)?




  • The list_a is ordinate but the list_b not.

  • Each item have this size: images/00000cd9fc6ae2fe9ec4bbdb2bf27318f2babc00.png

  • The order doesnt matter, i want know the surplus.







python python-3.x list performance






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited 2 days ago









Jean-François Fabre

101k954109




101k954109










asked 2 days ago









Vinicius MoraisVinicius Morais

1779




1779








  • 5





    Does the order matter? If not, try using sets. With sets, subtraction should be linear: set_c = set_a - set_b.

    – L3viathan
    2 days ago













  • But is possible make this in python?

    – Vinicius Morais
    2 days ago











  • The python will use the most efficient way to make this operation?

    – Vinicius Morais
    2 days ago






  • 1





    Yes, I mean the Python datatype set.

    – L3viathan
    2 days ago








  • 1





    @tripleee It's not a duplicate of that - that question is about mapping subtraction over a list, this question is about the difference between what's included in the lists.

    – SpoonMeiser
    2 days ago














  • 5





    Does the order matter? If not, try using sets. With sets, subtraction should be linear: set_c = set_a - set_b.

    – L3viathan
    2 days ago













  • But is possible make this in python?

    – Vinicius Morais
    2 days ago











  • The python will use the most efficient way to make this operation?

    – Vinicius Morais
    2 days ago






  • 1





    Yes, I mean the Python datatype set.

    – L3viathan
    2 days ago








  • 1





    @tripleee It's not a duplicate of that - that question is about mapping subtraction over a list, this question is about the difference between what's included in the lists.

    – SpoonMeiser
    2 days ago








5




5





Does the order matter? If not, try using sets. With sets, subtraction should be linear: set_c = set_a - set_b.

– L3viathan
2 days ago







Does the order matter? If not, try using sets. With sets, subtraction should be linear: set_c = set_a - set_b.

– L3viathan
2 days ago















But is possible make this in python?

– Vinicius Morais
2 days ago





But is possible make this in python?

– Vinicius Morais
2 days ago













The python will use the most efficient way to make this operation?

– Vinicius Morais
2 days ago





The python will use the most efficient way to make this operation?

– Vinicius Morais
2 days ago




1




1





Yes, I mean the Python datatype set.

– L3viathan
2 days ago







Yes, I mean the Python datatype set.

– L3viathan
2 days ago






1




1





@tripleee It's not a duplicate of that - that question is about mapping subtraction over a list, this question is about the difference between what's included in the lists.

– SpoonMeiser
2 days ago





@tripleee It's not a duplicate of that - that question is about mapping subtraction over a list, this question is about the difference between what's included in the lists.

– SpoonMeiser
2 days ago












4 Answers
4






active

oldest

votes


















8














you can create one set of the first file contents, then just use difference or symmetric_difference depending on what you call a difference



with open("list_a.txt") as f:
set_a = set(f)

with open("list_b.txt") as f:
diffs = set_a.difference(f)


if list_b.txt contains more items than list_a.txt you want to swap them or use set_a.symmetric_difference(f) instead, depending on what you need.



difference(f) works but still has to construct a new set internally. Not a great performance gain (see set issubset performance difference depending on the argument type), but it's shorter.






share|improve this answer


























  • Nice, this avoids having to allocate space for the second set.

    – L3viathan
    2 days ago






  • 1





    Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

    – Jean-François Fabre
    2 days ago













  • But the complexity is the same of subtract sets?

    – Vinicius Morais
    2 days ago











  • @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

    – L3viathan
    2 days ago






  • 1





    @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

    – a_guest
    2 days ago





















8














Try using sets:



with open("list_a.txt") as f:
set_a = set(f)

with open("list_b.txt") as f:
set_b = set(f)

set_c = set_a - set_b

with open("list_c.txt","w") as f:
for c in set_c:
f.write(c)


The complexity of subtracting two sets is O(n) in the size of the set a.






share|improve this answer





















  • 2





    You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

    – jsbueno
    2 days ago






  • 11





    yes but doing set(f) in with block ensures that it closes the file

    – Jean-François Fabre
    2 days ago



















2














To extend the comment of @L3viathan
If order of element is not important set is the rigth way.
here a dummy example you can adapt:



l1 = [0,1,2,3,4,5]
l2 = [3,4,5]
setL1 = set(l1) # transform the list into a set
setL2 = set(l2)
setDiff = setl1 - setl2 # make the difference
listeDiff = list(setDiff) # if you want to have your element back in a list


as you see is pretty straightforward in python.






share|improve this answer































    2














    In case order matters you can presort the lists together with item indices and then iterate over them together:



    list_2 = sorted(list_2)
    diff_idx =
    j = 0
    for i, x in sorted(enumerate(list_1), key=lambda x: x[1]):
    if x != list_2[j]:
    diff_idx.append(i)
    else:
    j += 1
    diff = [list_1[i] for i in sorted(diff_idx)]


    This has time complexity of the sorting algorithm, i.e. O(n*log n).






    share|improve this answer

























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      4 Answers
      4






      active

      oldest

      votes








      4 Answers
      4






      active

      oldest

      votes









      active

      oldest

      votes






      active

      oldest

      votes









      8














      you can create one set of the first file contents, then just use difference or symmetric_difference depending on what you call a difference



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      diffs = set_a.difference(f)


      if list_b.txt contains more items than list_a.txt you want to swap them or use set_a.symmetric_difference(f) instead, depending on what you need.



      difference(f) works but still has to construct a new set internally. Not a great performance gain (see set issubset performance difference depending on the argument type), but it's shorter.






      share|improve this answer


























      • Nice, this avoids having to allocate space for the second set.

        – L3viathan
        2 days ago






      • 1





        Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

        – Jean-François Fabre
        2 days ago













      • But the complexity is the same of subtract sets?

        – Vinicius Morais
        2 days ago











      • @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

        – L3viathan
        2 days ago






      • 1





        @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

        – a_guest
        2 days ago


















      8














      you can create one set of the first file contents, then just use difference or symmetric_difference depending on what you call a difference



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      diffs = set_a.difference(f)


      if list_b.txt contains more items than list_a.txt you want to swap them or use set_a.symmetric_difference(f) instead, depending on what you need.



      difference(f) works but still has to construct a new set internally. Not a great performance gain (see set issubset performance difference depending on the argument type), but it's shorter.






      share|improve this answer


























      • Nice, this avoids having to allocate space for the second set.

        – L3viathan
        2 days ago






      • 1





        Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

        – Jean-François Fabre
        2 days ago













      • But the complexity is the same of subtract sets?

        – Vinicius Morais
        2 days ago











      • @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

        – L3viathan
        2 days ago






      • 1





        @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

        – a_guest
        2 days ago
















      8












      8








      8







      you can create one set of the first file contents, then just use difference or symmetric_difference depending on what you call a difference



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      diffs = set_a.difference(f)


      if list_b.txt contains more items than list_a.txt you want to swap them or use set_a.symmetric_difference(f) instead, depending on what you need.



      difference(f) works but still has to construct a new set internally. Not a great performance gain (see set issubset performance difference depending on the argument type), but it's shorter.






      share|improve this answer















      you can create one set of the first file contents, then just use difference or symmetric_difference depending on what you call a difference



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      diffs = set_a.difference(f)


      if list_b.txt contains more items than list_a.txt you want to swap them or use set_a.symmetric_difference(f) instead, depending on what you need.



      difference(f) works but still has to construct a new set internally. Not a great performance gain (see set issubset performance difference depending on the argument type), but it's shorter.







      share|improve this answer














      share|improve this answer



      share|improve this answer








      edited 2 days ago

























      answered 2 days ago









      Jean-François FabreJean-François Fabre

      101k954109




      101k954109













      • Nice, this avoids having to allocate space for the second set.

        – L3viathan
        2 days ago






      • 1





        Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

        – Jean-François Fabre
        2 days ago













      • But the complexity is the same of subtract sets?

        – Vinicius Morais
        2 days ago











      • @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

        – L3viathan
        2 days ago






      • 1





        @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

        – a_guest
        2 days ago





















      • Nice, this avoids having to allocate space for the second set.

        – L3viathan
        2 days ago






      • 1





        Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

        – Jean-François Fabre
        2 days ago













      • But the complexity is the same of subtract sets?

        – Vinicius Morais
        2 days ago











      • @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

        – L3viathan
        2 days ago






      • 1





        @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

        – a_guest
        2 days ago



















      Nice, this avoids having to allocate space for the second set.

      – L3viathan
      2 days ago





      Nice, this avoids having to allocate space for the second set.

      – L3viathan
      2 days ago




      1




      1





      Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

      – Jean-François Fabre
      2 days ago







      Well, not really, because internally a set is created, then thrown away. but it's thrown away faster

      – Jean-François Fabre
      2 days ago















      But the complexity is the same of subtract sets?

      – Vinicius Morais
      2 days ago





      But the complexity is the same of subtract sets?

      – Vinicius Morais
      2 days ago













      @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

      – L3viathan
      2 days ago





      @ViniciusMorais The time complexity is the same, the space complexity (apparently), too.

      – L3viathan
      2 days ago




      1




      1





      @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

      – a_guest
      2 days ago







      @L3viathan In case the original list (the original set) is not needed anymore you can use difference_update. This should not require to allocate a new set internally.

      – a_guest
      2 days ago















      8














      Try using sets:



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      set_b = set(f)

      set_c = set_a - set_b

      with open("list_c.txt","w") as f:
      for c in set_c:
      f.write(c)


      The complexity of subtracting two sets is O(n) in the size of the set a.






      share|improve this answer





















      • 2





        You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

        – jsbueno
        2 days ago






      • 11





        yes but doing set(f) in with block ensures that it closes the file

        – Jean-François Fabre
        2 days ago
















      8














      Try using sets:



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      set_b = set(f)

      set_c = set_a - set_b

      with open("list_c.txt","w") as f:
      for c in set_c:
      f.write(c)


      The complexity of subtracting two sets is O(n) in the size of the set a.






      share|improve this answer





















      • 2





        You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

        – jsbueno
        2 days ago






      • 11





        yes but doing set(f) in with block ensures that it closes the file

        – Jean-François Fabre
        2 days ago














      8












      8








      8







      Try using sets:



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      set_b = set(f)

      set_c = set_a - set_b

      with open("list_c.txt","w") as f:
      for c in set_c:
      f.write(c)


      The complexity of subtracting two sets is O(n) in the size of the set a.






      share|improve this answer















      Try using sets:



      with open("list_a.txt") as f:
      set_a = set(f)

      with open("list_b.txt") as f:
      set_b = set(f)

      set_c = set_a - set_b

      with open("list_c.txt","w") as f:
      for c in set_c:
      f.write(c)


      The complexity of subtracting two sets is O(n) in the size of the set a.







      share|improve this answer














      share|improve this answer



      share|improve this answer








      edited 2 days ago

























      answered 2 days ago









      L3viathanL3viathan

      15.7k12847




      15.7k12847








      • 2





        You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

        – jsbueno
        2 days ago






      • 11





        yes but doing set(f) in with block ensures that it closes the file

        – Jean-François Fabre
        2 days ago














      • 2





        You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

        – jsbueno
        2 days ago






      • 11





        yes but doing set(f) in with block ensures that it closes the file

        – Jean-François Fabre
        2 days ago








      2




      2





      You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

      – jsbueno
      2 days ago





      You know - an open file is an iterator - therefore you can simply do set_a = set(open("list_a.txt"))

      – jsbueno
      2 days ago




      11




      11





      yes but doing set(f) in with block ensures that it closes the file

      – Jean-François Fabre
      2 days ago





      yes but doing set(f) in with block ensures that it closes the file

      – Jean-François Fabre
      2 days ago











      2














      To extend the comment of @L3viathan
      If order of element is not important set is the rigth way.
      here a dummy example you can adapt:



      l1 = [0,1,2,3,4,5]
      l2 = [3,4,5]
      setL1 = set(l1) # transform the list into a set
      setL2 = set(l2)
      setDiff = setl1 - setl2 # make the difference
      listeDiff = list(setDiff) # if you want to have your element back in a list


      as you see is pretty straightforward in python.






      share|improve this answer




























        2














        To extend the comment of @L3viathan
        If order of element is not important set is the rigth way.
        here a dummy example you can adapt:



        l1 = [0,1,2,3,4,5]
        l2 = [3,4,5]
        setL1 = set(l1) # transform the list into a set
        setL2 = set(l2)
        setDiff = setl1 - setl2 # make the difference
        listeDiff = list(setDiff) # if you want to have your element back in a list


        as you see is pretty straightforward in python.






        share|improve this answer


























          2












          2








          2







          To extend the comment of @L3viathan
          If order of element is not important set is the rigth way.
          here a dummy example you can adapt:



          l1 = [0,1,2,3,4,5]
          l2 = [3,4,5]
          setL1 = set(l1) # transform the list into a set
          setL2 = set(l2)
          setDiff = setl1 - setl2 # make the difference
          listeDiff = list(setDiff) # if you want to have your element back in a list


          as you see is pretty straightforward in python.






          share|improve this answer













          To extend the comment of @L3viathan
          If order of element is not important set is the rigth way.
          here a dummy example you can adapt:



          l1 = [0,1,2,3,4,5]
          l2 = [3,4,5]
          setL1 = set(l1) # transform the list into a set
          setL2 = set(l2)
          setDiff = setl1 - setl2 # make the difference
          listeDiff = list(setDiff) # if you want to have your element back in a list


          as you see is pretty straightforward in python.







          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered 2 days ago









          RomainL.RomainL.

          308313




          308313























              2














              In case order matters you can presort the lists together with item indices and then iterate over them together:



              list_2 = sorted(list_2)
              diff_idx =
              j = 0
              for i, x in sorted(enumerate(list_1), key=lambda x: x[1]):
              if x != list_2[j]:
              diff_idx.append(i)
              else:
              j += 1
              diff = [list_1[i] for i in sorted(diff_idx)]


              This has time complexity of the sorting algorithm, i.e. O(n*log n).






              share|improve this answer






























                2














                In case order matters you can presort the lists together with item indices and then iterate over them together:



                list_2 = sorted(list_2)
                diff_idx =
                j = 0
                for i, x in sorted(enumerate(list_1), key=lambda x: x[1]):
                if x != list_2[j]:
                diff_idx.append(i)
                else:
                j += 1
                diff = [list_1[i] for i in sorted(diff_idx)]


                This has time complexity of the sorting algorithm, i.e. O(n*log n).






                share|improve this answer




























                  2












                  2








                  2







                  In case order matters you can presort the lists together with item indices and then iterate over them together:



                  list_2 = sorted(list_2)
                  diff_idx =
                  j = 0
                  for i, x in sorted(enumerate(list_1), key=lambda x: x[1]):
                  if x != list_2[j]:
                  diff_idx.append(i)
                  else:
                  j += 1
                  diff = [list_1[i] for i in sorted(diff_idx)]


                  This has time complexity of the sorting algorithm, i.e. O(n*log n).






                  share|improve this answer















                  In case order matters you can presort the lists together with item indices and then iterate over them together:



                  list_2 = sorted(list_2)
                  diff_idx =
                  j = 0
                  for i, x in sorted(enumerate(list_1), key=lambda x: x[1]):
                  if x != list_2[j]:
                  diff_idx.append(i)
                  else:
                  j += 1
                  diff = [list_1[i] for i in sorted(diff_idx)]


                  This has time complexity of the sorting algorithm, i.e. O(n*log n).







                  share|improve this answer














                  share|improve this answer



                  share|improve this answer








                  edited 2 days ago

























                  answered 2 days ago









                  a_guesta_guest

                  5,60821241




                  5,60821241






























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